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Note: Conversion is based on the latest values and formulas.
Expasy - Compute pI/Mw tool Compute pI/Mw for UniProtKB entries or one user-entered sequence Please enter one or several UniProtKB AC/ID (e.g. P04406 or ALBU_HUMAN), each on a separate line.Alternatively, enter one protein sequence in single letter code.
PeptideMass - Expasy PeptideMass [Documentation / References] cleaves a protein sequence from the UniProt Knowledgebase (Swiss-Prot and TrEMBL) or a user-entered protein sequence with a chosen enzyme, and computes the masses of the generated peptides. The tool also returns theoretical isoelectric point and mass values for the protein of interest
Protein Identification and Analysis Tools in the Expasy Server This tool calculates the estimated pI and Mw of a specified Swiss-Prot/TrEMBL entry or a user-entered AA sequence. These parameters are useful if you want to know the approximate region of a 2-D gel where a protein may be found.
Expasy - ProtParam Experience shows that this could result in more than 10% error in the computed extinction coefficient. Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water.
Expasy - ProtParam documentation The extinction coefficient indicates how much light a protein absorbs at a certain wavelength. It is useful to have an estimation of this coefficient for following a protein which a spectrophotometer when purifying it.
ProtParam References - Expasy ProtParam allows computation of physical and chemical parameters for proteins stored in UniProtKB or user-entered sequences.
Expasy - ProtScale ProtScale allows you to compute and represent the profile produced by any amino acid scale on a selected protein. An amino acid scale is defined by a numerical value assigned to each type of amino acid. The most frequently used scales are the hydrophobicity or hydrophilicity scales and the secondary structure conformational parameters scales, but many other scales exist which …
History list - Expasy 20 Nov 2009 · ProtParam: New method to calculate extinction coefficient We have recently changed the way ProtParam computes the extinction coefficient. We are now using the more accurate values described by Pace et al (PubMed 8563639). Details can be found in the ProtParam documentation.
Expasy - ProtParam The computed parameters include the molecular weight, theoretical pI, amino acid composition, atomic composition, extinction coefficient, estimated half-life, instability index, aliphatic index and grand average of hydropathicity (GRAVY) .
Protein Analysis Tools on the ExPASy Server 571 52 polypeptides to their mature forms before using them for calculations or protein identi-fication procedures. Thus, protein signal sequences and propeptides are removed where found, and precursor molecules processed into their resulting chains. The characterization and analysis tools described in this chapter all accept Swiss-