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FigTree | BEAST Documentation FigTree is a program for viewing trees, including summary information produced by TreeAnnotator, and producing publication quality figures.
Downloading and installing BEAST on UNIX/Linux Downloading and installing BEAST on UNIX/Linux BEAST is a software package for phylogenetic analysis with an emphasis on time-scaled trees.
BEAST Software - Bayesian Evolutionary Analysis Sampling … BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or …
Phylogeographic diffusion in discrete space | BEAST Documentation Running BEAUti Running BEAST Analyzing the BEAST output using Tracer Summarizing and visualizing the trees Visualizing MCC trees and calculating Bayes factor support for rates …
LogCombiner | BEAST Documentation LogCombiner allows you to combine log and tree files from multiple independent runs of BEAST. It can be run with a user-interface or as a command-line utility.
Frequently Asked Questions | BEAST Documentation BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or …
Estimating rates and dates from time-stamped sequences To inform BEAUti/BEAST about the sampling dates of the sequences, go to the Tips menu and select the “Use tip dates” option. By default all the taxa are assumed to have a date of zero …
First Tutorial | BEAST Documentation Running BEAST for the first time This tutorial will guide you through running BEAST and some of its accessory programs to do a simple phylogenetic analysis. If you haven’t already, download …
Visualizing phylogenetic trees using FigTree | BEAST … Visualizing phylogenetic trees using FigTree This tutorial provides a step-by-step tutorial for analyzing an Ebola virus timetree. This tutorial can be easily adapted to display and …
BEAGLE | BEAST Documentation Using BEAGLE with BEAST BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics package. It …