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Frequently Asked Questions | BEAST Documentation BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or …
LogCombiner | BEAST Documentation LogCombiner allows you to combine log and tree files from multiple independent runs of BEAST. It can be run with a user-interface or as a command-line utility.
Downloading and installing BEAST on UNIX/Linux Downloading BEAST Tip: If you want to install BEAST on the Mac OS X command-line, we strongly recommend using the Homebrew package manager. See below for instructions for …
Visualizing phylogenetic trees using FigTree | BEAST … Visualizing phylogenetic trees using FigTree This tutorial provides a step-by-step tutorial for analyzing an Ebola virus timetree. This tutorial can be easily adapted to display and …
BEAST Software - Bayesian Evolutionary Analysis Sampling … BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or …
First Tutorial | BEAST Documentation Running BEAST for the first time This tutorial will guide you through running BEAST and some of its accessory programs to do a simple phylogenetic analysis. If you haven’t already, download …
Phylogeographic diffusion in discrete space | BEAST Documentation Running BEAUti Running BEAST Analyzing the BEAST output using Tracer Summarizing and visualizing the trees Visualizing MCC trees and calculating Bayes factor support for rates …
BEAGLE | BEAST Documentation To test the installation, run BEAST and when the options dialog box appears, select “Use BEAGLE library” and “Show list of available BEAGLE resources”: The BEAGLE options …
FigTree | BEAST Documentation FigTree is a program for viewing trees, including summary information produced by TreeAnnotator, and producing publication quality figures.
Estimating rates and dates from time-stamped sequences To inform BEAUti/BEAST about the sampling dates of the sequences, go to the Tips menu and select the “Use tip dates” option. By default all the taxa are assumed to have a date of zero …